Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PCPG rs151132 chr17:3271948 T/G 0.000426 171 18.2 25 27.2 KM Plot
PCPG rs151185675 chr7:105167992 TC/T 6.69E-5 174 20.28 30.45 2.28 KM Plot
PCPG rs151187 chr17:3251078 A/G 0.000207 173 18.1 25.87 26.88 KM Plot
PCPG rs1512085 chr2:107246133 A/G 0.000261 175 26.57 23.53 25.87 KM Plot
PCPG rs1512086 chr2:107246425 T/C 0.000213 178 26.57 23.53 25.87 KM Plot
PCPG rs1512087 chr2:107250055 G/C 0.000212 178 26.57 21.95 25.87 KM Plot
PCPG rs151235380 chr7:105162638 G/C 5.12E-5 178 20.2 29.43 2.28 KM Plot
PCPG rs1516581 chr3:80593229 T/C 0.000124 177 19.87 24.03 27.4 KM Plot
PCPG rs1516582 chr3:80585039 T/A 6.33E-5 177 19.53 24.53 27.4 KM Plot
PCPG rs1516585 chr3:80604703 A/G 5.95E-5 178 27.2 23.53 19.53 KM Plot
PCPG rs1534008 chr7:156259583 C/T 3.79E-5 175 25.7 19.42 2.93 KM Plot
PCPG rs1535278 chr6:26481317 C/T 6.66E-7 177 10.68 35.32 24.5 KM Plot
PCPG rs1536 chr14:74524529 A/G 0.000221 175 25.4 27.43 10.43 KM Plot
PCPG rs1544808 chr16:71612671 G/A 9.96E-6 175 23.83 30.93 14.5 KM Plot
PCPG rs1546318 chr4:78949372 G/T 0 173 2.93 25.87 25.4 KM Plot